gaqjobs.blogg.se - Posorted bam file format 10x scatac

ArchRBrowser: Launch ArchR Genome Browser.addUMAP: Add a UMAP embedding of a reduced dimensions object to an.addTSNE: Add a TSNE embedding of a reduced dimensions object to an.addTrajectory: Add a Supervised Trajectory to an ArchR Project.addTileMatrix: Add TileMatrix to ArrowFiles or an ArchRProject.addSlingShotTrajectories: Add a Slingshot Trajectories to an ArchR Project #NEW.addSampleColData: Add information to sampleColData in an ArchRProject.addReproduciblePeakSet: Add a Reproducible Peak Set to an ArchRProject.addProjectSummary: Add projectSummary to an ArchRProject.addPeakSet: Add a peak set to an ArchRProject.addPeakMatrix: Add a Peak Matrix to the ArrowFiles of an ArchRProject.addPeakAnnotations: Add peak annotations to an ArchRProject.addPeak2GeneLinks: Add Peak2GeneLinks to an ArchRProject.addMotifAnnotations: Add motif annotations to an ArchRProject.addMonocleTrajectory: Add a Monocle Trajectory to an ArchR Project #NEW.addModuleScore: Add Module Scores to an ArchRProject.addIterativeLSI: Add an Iterative LSI-based dimensionality reduction to an.addImputeWeights: Add Imputation Weights to an ArchRProject.addHarmony: Add Harmony Batch Corrected Reduced Dims to an ArchRProject.addGroupCoverages: Add Group Coverages to an ArchRProject object.addGeneScoreMatrix: Add GeneScoreMatrix to ArrowFiles or an ArchRProject.addGeneIntegrationMatrix: Add a GeneIntegrationMatrix to ArrowFiles or an ArchRProject.addGeneExpressionMatrix: Add Gene Expression Matrix to ArrowFiles or an ArchRProject.addFeatureMatrix: Add a feature matrix to an ArchRProject or a set of.addFeatureCounts: This function will add total counts of scATAC cells in.addDoubletScores: Add Doublet Scores to a collection of ArrowFiles or an.

addDeviationsMatrix: Add a matrix of deviations for a given peakAnnotation to.

addDemuxletResults: Add Demuxlet Results to ArchR Project.

addCombinedDims: Combine two or more modalities dimensionality reductions.

addCoAccessibility: Add Peak Co-Accessibility to an ArchRProject.

addClusters: Add cluster information to an ArchRProject.

addCellColData: Add information to cellColData in an ArchRProject.

addBgdPeaks: Add Background Peaks to an ArchRProject.

addArchRVerbose: Set ArchR Verbosity for Log Messaging.

addArchRThreads: Add a globally-applied number of threads to use for parallel.

addArchRGenome: Add a globally defined genome to all ArchR functions.

addArchRChrPrefix: Add a globally-applied requirement for chromosome prefix.

addArchRAnnotations: Add ArchR annotations to an ArchRProject.